CreatePPMFromSBSVCFs: Create position probability matrices (PPM) from a list of SBS...

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Create position probability matrices (PPM) from a list of SBS vcfs

Description

Create position probability matrices (PPM) from a list of SBS vcfs

Usage

CreatePPMFromSBSVCFs(list.of.SBS.vcfs, ref.genome, seq.context.width)

Arguments

list.of.SBS.vcfs	List of in-memory data frames of pure SBS mutations – no DBS or 3+BS mutations.
ref.genome	A ref.genome argument as described in ICAMS.
seq.context.width	The number of preceding and following bases to be extracted around the mutated position from ref.genome.

Value

A list of position probability matrices (PPM).

ICAMS documentation built on June 22, 2024, 6:47 p.m.