AddSBSClass: Add SBS mutation class to an annotated SBS VCF
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
AddSBSClass R Documentation
Add SBS mutation class to an annotated SBS VCF
Description
Add SBS mutation class to an annotated SBS VCF
Usage
AddSBSClass(vcf)
Arguments
vcf
An in-memory VCF file annotated with sequence context and
transcript information by function AnnotateSBSVCF. It must
*not* contain indels and must *not* contain DBS (double base
substitutions), or triplet base substitutions etc., even if encoded as
neighboring SBS.
Value
The original vcf with three additional columns
SBS96.class, SBS192.class and SBS1536.class added.
ICAMS documentation built on June 15, 2025, 1:08 a.m.
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| AddSBSClass | R Documentation |
Add SBS mutation class to an annotated SBS VCF
Description
Add SBS mutation class to an annotated SBS VCF
Usage
AddSBSClass(vcf)
Arguments
vcf |
An in-memory VCF file annotated with sequence context and
transcript information by function |
Value
The original vcf with three additional columns
SBS96.class, SBS192.class and SBS1536.class added.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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