AddTranscript: Add transcript information to a data frame with mutation...
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
AddTranscript R Documentation
Add transcript information to a data frame with mutation records
Description
Add transcript information to a data frame with mutation records
Usage
AddTranscript(df, trans.ranges = NULL, ref.genome, name.of.VCF = NULL)
Arguments
df
A data frame storing mutation records of a VCF file.
trans.ranges
A data.table which contains
transcript range and strand information. Please refer to
TranscriptRanges for more details.
ref.genome
A ref.genome argument as described in
ICAMS.
name.of.VCF
Name of the VCF file.
Value
A data frame with new columns added to the input data frame,
which contain the mutated gene's name, range and strand information.
ICAMS documentation built on June 22, 2024, 6:47 p.m.
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| AddTranscript | R Documentation |
Add transcript information to a data frame with mutation records
Description
Add transcript information to a data frame with mutation records
Usage
AddTranscript(df, trans.ranges = NULL, ref.genome, name.of.VCF = NULL)
Arguments
df |
A data frame storing mutation records of a VCF file. |
trans.ranges |
A |
ref.genome |
A |
name.of.VCF |
Name of the VCF file. |
Value
A data frame with new columns added to the input data frame, which contain the mutated gene's name, range and strand information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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