example_first_pred_tmb: First-Fit Predictive Model Fitting on Example Data

In ICBioMark: Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers

Description

An example output from the function pred_first_fit(), applied to pre-loaded example mutation data.

Usage

example_first_pred_tmb

Format

A list with six entries:

fit

A gglasso fit.

panel_genes

A matrix where each row corresponds to a gene, each column to an iteration of the group lasso with a different penalty factor, and the elements booleans specifying whether that gene was selected to be included in that iteration.

panel_lengths

A vector giving total panel length for each gglasso iteration.

p

The vector of weights used in the optimisation procedure.

K

The bias penalty factor used in the optimisation procedure.

names

Gene and mutation type information as used when fitting the generative model.

ICBioMark documentation built on Nov. 15, 2021, 5:09 p.m.