example_tables: Mutation Matrices from Simulated Data

In ICBioMark: Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers

Description

Mutation data extracted from the pre-loaded example mutation data example_maf_data, using the function get_mutation_tables().

Usage

example_tables

Format

A list with three entries:

train

An object 'train'.

val

An object 'val'.

test

An object 'test'.

Each of these three objects is a list with the following entries (for more detail see the documentation for the function get_table_from_maf()):

matrix

A sparse matrix of mutations.

sample_list

A character vector of sample IDs, corresponding to the rows of the mutation matrix.

gene_list

A character vector of gene names.

mut_types_list

A character vector of mutation types.

colnames

A character vector of gene name/mutation type combinations (in each case separated by the character "_"), corresponding to the columns of the mutation matrix.

ICBioMark documentation built on Nov. 15, 2021, 5:09 p.m.