nsclc_survival: Non-Small Cell Lung Cancer Survival and Clinical Data
In ICBioMark: Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers
Description
Usage
Format
Source
Description
A pre-loaded clinical dataset containing survival and clinical data from Campbell et. al (2016), downloaded from The Cancer Genome Atlas.
Usage
1
Format
An annotated mutation dataframe with 23 columns and 1144 rows. Each row
corresponds to a sample, and details clinical and survival information about the
patient from whom the sample was derived. Its columns are as follows:
- CASE_ID
- AGE
- AGE_AT_SURGERY
- CANCER_TYPE
- CANCER_TYPE_DETAILED
- DAYS_TO_DEATH
- DAYS_TO_LAST_FOLLOWUP
- FRACTION_GENOME_ALTERED
- HISTORY_NEOADJUVANT_TRTYN
- HISTORY_OTHER_MALIGNANCY
- MUTATION_COUNT
- M_STAGE
- N_STAGE
- ONCOTREE_CODE
- OS_MONTHS
- OS_STATUS
- SAMPLE_COUNT
- SEX
- SMOKING_HISTORY
- SMOKING_PACK_YEARS
- SOMATIC_STATUS
- STAGE
- T_STAGE
Source
https://www.cbioportal.org/study/clinicalData?id=nsclc_tcga_broad_2016
ICBioMark documentation built on Nov. 15, 2021, 5:09 p.m.
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Description Usage Format Source
Description
A pre-loaded clinical dataset containing survival and clinical data from Campbell et. al (2016), downloaded from The Cancer Genome Atlas.
Usage
1 |
Format
An annotated mutation dataframe with 23 columns and 1144 rows. Each row corresponds to a sample, and details clinical and survival information about the patient from whom the sample was derived. Its columns are as follows:
- CASE_ID
- AGE
- AGE_AT_SURGERY
- CANCER_TYPE
- CANCER_TYPE_DETAILED
- DAYS_TO_DEATH
- DAYS_TO_LAST_FOLLOWUP
- FRACTION_GENOME_ALTERED
- HISTORY_NEOADJUVANT_TRTYN
- HISTORY_OTHER_MALIGNANCY
- MUTATION_COUNT
- M_STAGE
- N_STAGE
- ONCOTREE_CODE
- OS_MONTHS
- OS_STATUS
- SAMPLE_COUNT
- SEX
- SMOKING_HISTORY
- SMOKING_PACK_YEARS
- SOMATIC_STATUS
- STAGE
- T_STAGE
Source
https://www.cbioportal.org/study/clinicalData?id=nsclc_tcga_broad_2016
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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