example_maf_data: Simulated MAF Data
In ICBioMark: Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers
Description
An example dataset generated by the function generate_maf_data(), with n_sample = 100 and n_genes = 20.
Usage
1
Format
A list with two entries:
- maf
An annotated mutation dataframe with 3 columns and 1346 rows:
- Tumor_Sample_Barcode
A sample id for each mutation.
- Hugo_Symbol
The name of the gene location for each mutation.
- Variant_Classification
The mutation type for each mutation.
- gene_lengths
A data frame with two rows:
- Hugo_Symbol
The name of each gene.
- max_cds
The length of each gene, as defined by maximum coding sequence.
ICBioMark documentation built on Nov. 15, 2021, 5:09 p.m.
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Description
An example dataset generated by the function generate_maf_data(), with n_sample = 100 and n_genes = 20.
Usage
1 |
Format
A list with two entries:
- maf
An annotated mutation dataframe with 3 columns and 1346 rows:
- Tumor_Sample_Barcode
A sample id for each mutation.
- Hugo_Symbol
The name of the gene location for each mutation.
- Variant_Classification
The mutation type for each mutation.
- gene_lengths
A data frame with two rows:
- Hugo_Symbol
The name of each gene.
- max_cds
The length of each gene, as defined by maximum coding sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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