This function aggregates the output of a run over the entire output, i.e., all of the patches. It writes the output one level above the folder pointed to by readDir, if writeDir is NULL. Output consists of 2 csv files, one for males and one for females, "...M_LandscapeAgg_Run...csv".
Directory where output was written to
Directory to write output to. Default is one level above readDir
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## Not run: # This assumes user has run MGDrivE and output is in fPath. # See vignette for examples on how to run MGDrivE # read/write dirs fPath <- "folder/containing/output" oPath <- "folder/to/write/stuff" # first, split output by patch and aggregate females by mate genotype # remember, cube is for example and changes with simulation # landscape aggregation will work if females are not aggregated, but it's slower cube <- cubeMendelian() splitOutput(readDir = fPath, writeDir = NULL, remFile = TRUE) aggregateFemales(readDir= fPath, writeDi = NULL, genotypes = cube$genotypesID, remFile = TRUE) # aggregate mosquitoes over entire landscape # no return value aggregateOutput(readDir = fPath, writeDir = NULL) ## End(Not run)
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