ASAP2OM: Convert ASAP 3 assessments into an operating model

In MSEtool: Management Strategy Evaluation Toolkit

Convert ASAP 3 assessments into an operating model

Description

Reads a fitted ASAP model and uses the MLE estimates with identical reconstruction among simulations. Future recruitment is sampled from a lognormal distribution with autocorrelation. ASAP2Data imports a Data object.

Usage

ASAP2OM(
  asap,
  nsim = 48,
  proyears = 50,
  mcmc = FALSE,
  Name = "ASAP Model",
  Source = "No source provided",
  nyr_par_mu = 3,
  Author = "No author provided",
  report = FALSE,
  silent = FALSE
)

ASAP2Data(asap, Name = "ASAP assessment")

Arguments

asap	A list returned by ASAP, e.g., asap <- dget("asap3.rdat").
nsim	The number of simulations in the operating model
proyears	The number of MSE projection years
mcmc	Logical, whether to use mcmc samples. Currently unsupported.
Name	The name of the operating model
Source	Reference to assessment documentation e.g. a url
nyr_par_mu	integer, the number of recent years to estimate vulnerability over for future projections
Author	Who did the assessment
report	Logical, should a comparison of biomass reconstruction be produced?
silent	Logical, should progress reporting be printed to the console?

Details

Length at age is not used in ASAP so arbitrary placeholder values are used for length-based parameters. Update these parameters to model length in the operating model.

Value

An operating model OM class.

Author(s)

Q. Huynh

See Also

Assess2OM

MSEtool documentation built on Sept. 30, 2024, 9:22 a.m.