API for MSEtool
Management Strategy Evaluation Toolkit

Global functions
AAV Source code
Assess_diagnostic Source code
Assessment Man page
Assessment-class Man page
Awatea2OM Man page Source code
AwateaRead Source code
DDSS_4010 Man page
DDSS_75MSY Man page
DDSS_MSY Man page
DD_SS Man page Source code
DD_TMB Man page Source code
Data-rich-MP Man page
HCR40_10 Man page Source code
HCR60_20 Man page Source code
HCR_FB Man page Source code
HCR_MSY Man page Source code
HCR_ramp Man page Source code
HCRlin Man page Source code
LinInt Source code
LinInterp Man page Source code
MSEtool Man page
MSEtool-package Man page
PRBcalc Man page Source code
PRBplot Source code
Probs Man page Source code
SCA Man page Source code
SCA2 Man page Source code
SCA_4010 Man page
SCA_75MSY Man page
SCA_MSY Man page
SP Man page Source code
SP_4010 Man page
SP_75MSY Man page
SP_MSY Man page
SP_SS Man page Source code
SP_production Man page Source code
SRopt Man page Source code
SS2Data Man page Source code
SS2OM Man page Source code
assign_Assessment_slots Source code
avail Man page Source code
calc.mcmc Source code
calculate_TAC Man page Source code
create_png Source code
diagnostic_AM Man page Source code
expand_comp_matrix Source code
extract.area.sex.matrices Source code
extract.group.matrices Source code
extreme.outlier Source code
fetch.file.names Man page Source code
generate_plots_DD_SS Source code
generate_plots_DD_TMB Source code
generate_plots_SCA Source code
generate_plots_SCA2 Source code
generate_plots_SP Source code
generate_plots_SP_SS Source code
getGpars Man page Source code
getSR Man page Source code
get_MSY Source code
get_MSY_DD Source code
get_MSY_opt Source code
get_dependencies Source code
get_refpt2 Source code
get_sdreport Source code
getclass Source code
getinds Man page Source code
getsegment Source code
html_report Source code
iSCAM2Data Man page Source code
iSCAM2OM Man page Source code
iSCAMcomps Man page Source code
iSCAMinds Man page Source code
iVB Source code
ilogit Source code
ilogitm Source code
load.iscam.files Man page Source code
logit Source code
mahalanobis_contribution Source code
mahalanobis_robust Source code
mahdensplot Source code
mahplot Man page Source code
make_MP Man page Source code
make_subtitle Source code
makemov Man page Source code
mconv Source code
movdistil Man page Source code
mu Source code
negcorlogspace Man page Source code
optSR Man page Source code
optimize_TMB_model Source code
plot,Assessment,ANY-method Man page
plot_Kobe Source code
plot_SR Man page Source code
plot_betavar Man page Source code
plot_composition Man page Source code
plot_crosscorr Man page Source code
plot_generic_at_age Source code
plot_hessian_convergence Source code
plot_iter Source code
plot_lognormalvar Man page Source code
plot_max_gr Source code
plot_mov Man page Source code
plot_msg Source code
plot_normalvar Source code
plot_ogive Source code
plot_residuals Man page Source code
plot_retro_DD_SS Source code
plot_retro_DD_TMB Source code
plot_retro_SCA Source code
plot_retro_SCA2 Source code
plot_retro_SP Source code
plot_retro_SP_SS Source code
plot_steepness Man page Source code
plot_surplus_production Source code
plot_timeseries Man page Source code
plot_yield_DD Source code
plot_yield_SCA Source code
plot_yield_SP Source code
powdif Source code
prelim_AM Man page Source code
prepare_to_save_figure Source code
profile_likelihood Man page Source code
profile_likelihood_DD_SS Source code
profile_likelihood_DD_TMB Source code
profile_likelihood_SCA Source code
profile_likelihood_SCA2 Source code
profile_likelihood_SP Source code
profile_likelihood_SP_SS Source code
read.control.file Man page Source code
read.data.file Man page Source code
read.mcmc Man page Source code
read.par.file Man page Source code
read.projection.file Man page Source code
read.report.file Man page Source code
rescale_report Source code
retrospective Man page Source code
retrospective_AM Man page Source code
retrospective_DD_SS Source code
retrospective_DD_TMB Source code
retrospective_SCA Source code
retrospective_SCA2 Source code
retrospective_SP Source code
retrospective_SP_SS Source code
simmov Man page Source code
slp Source code
slp2 Source code
someplot Source code
strip.areas.groups Source code
strip.static.params Source code
summary,Assessment-method Man page
summary_DD_SS Source code
summary_DD_TMB Source code
summary_SCA Source code
summary_SCA2 Source code
summary_SP Source code
summary_SP_SS Source code
swordfish Man page
validateTMB Source code
vul_fn Source code
write_html_foot Source code
write_html_head Source code
write_table Source code
MSEtool documentation built on Oct. 17, 2018, 9:04 a.m.