Files in MSEtool
Management Strategy Evaluation Toolkit
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/sysdata.rda
R/SS2Data.R
R/MSE_functions.R
R/Fease_Functions.R
R/iSCAM2OM.R
R/MOM_object.r
R/popdyn_MICE.R
R/SS2MOM_plots.R
R/aaImportFrom.R
R/MMSE_plots.R
R/VPA2OM.R
R/Data_documentation.R
R/popdyn.R
R/Misc_Exported.R
R/WHAM2OM.R
R/PMobjects.R
R/DFO.R
R/MSE_Plotting_PMs.R
R/OM_plots.R
R/SS2MOM.R
R/applyMMP.R
R/Sketch_Functions.R
R/Class_definitions.R
R/MOM_import.R
R/OM_Plotting.R
R/MOM_plots.R
R/Awatea2OM.R
R/MMSE_Object.r
R/runMSE.R
R/B_Low_functions.R
R/MPs_Reference.R
R/OM_import.R
R/Data_Functions.R
R/MICE_Rel.R
R/OM_init_doc.R
R/SS2OM.R
R/Data_Plotting.R
R/MSC.R
R/SSinternal.R
R/Data_make_update.R
R/Movement_calcs.R
R/Turing.R
R/Misc_Internal.R
R/OM_functions.R
R/multiMSE.R
R/ASAP2OM.R
R/Data2csv.R
R/PMtable.R
R/MSE_Plotting.R
R/multiMSE_internal.R
R/SampleOM.R
R/utils.R
R/multi_q_estimation.R
R/Data_fit_index.R
src/MSYcalcs.cpp
src/genLenComp.cpp
src/movefit_Rcpp.cpp
src/RcppExports.cpp
src/grav.cpp
src/LinInter.cpp
src/calcVatAge.cpp
src/popddynCPP.cpp
inst/OM.xlsx
inst/Example_Chile_Hake.xlsx
inst/Data.xlsx
inst/Example_Chile_Hake.rmd
inst/OM.rmd
inst/Data.csv
inst/Data/Gulf_blue_tilefish.csv
inst/Data/Red_snapper.csv
inst/Data/China_rockfish.csv
inst/Data/Cobia.csv
inst/Data/Atlantic_mackerel.csv
inst/Data/ourReefFish.csv
inst/Rmd/Data/Data.md
inst/Rmd/Imp/Imp.Rmd
inst/Rmd/Hist/Hist.Rmd
inst/Rmd/OM/OM.Rmd
inst/Rmd/Stock/Stock.Rmd
inst/Rmd/Stock/Depletion.Rmd
inst/Rmd/Stock/Spatial.Rmd
inst/Rmd/Stock/NaturalMortality.Rmd
inst/Rmd/Stock/Recruitment.Rmd
inst/Rmd/Stock/Growth.Rmd
inst/Rmd/Stock/Maturity.Rmd
inst/Rmd/SS/SS2MOM.Rmd
inst/Rmd/SS/SS2OM.Rmd
inst/Rmd/Obs/Obs.Rmd
inst/Rmd/Fleet/Selectivity.Rmd
inst/Rmd/Fleet/Catchability.Rmd
inst/Rmd/Fleet/Effort.Rmd
inst/Rmd/Fleet/Fleet.Rmd
inst/Rmd/Fleet/MPA.Rmd
build/partial.rdb
data/ReqData.rda
data/Gulf_blue_tilefish.rda
data/Generic_IncE.rda
data/FleetDescription.rda
data/testOM.rda
data/Albacore_TwoFleet.rda
data/Simulation_1.rda
data/Generic_Obs.rda
data/Targeting_Small_Fish.rda
data/Perfect_Info.rda
data/Albacore.rda
data/Overages.rda
data/Perfect_Imp.rda
data/Bluefin_tuna.rda
data/Bluefin_tuna_WAtl.rda
data/Example_datafile.rda
data/FlatE_NDom.rda
data/Snapper.rda
data/ImpDescription.rda
data/Generic_DecE.rda
data/Precise_Biased.rda
data/DecE_Dom.rda
data/Target_All_Fish.rda
data/Porgy.rda
data/FlatE_HDom.rda
data/SimulatedData.rda
data/Toothfish.rda
data/Generic_FlatE.rda
data/Red_snapper.rda
data/MSEDescription.rda
data/FlatE_Dom.rda
data/OMDescription.rda
data/Precise_Unbiased.rda
data/DataDescription.rda
data/DecE_NDom.rda
data/Rockfish.rda
data/ourReefFish.rda
data/LHdatabase.rda
data/Mackerel.rda
data/Sole.rda
data/Cobia.rda
data/Imprecise_Unbiased.rda
data/DataSlots.rda
data/Atlantic_mackerel.rda
data/Blue_shark.rda
data/Butterfish.rda
data/IncE_NDom.rda
data/Generic_Fleet.rda
data/Herring.rda
data/IncE_HDom.rda
data/ObsDescription.rda
data/China_rockfish.rda
data/Low_Effort_Non_Target.rda
data/Taxa_Table.rda
data/HistDescription.rda
data/Imprecise_Biased.rda
data/StockDescription.rda
data/DecE_HDom.rda
man/TACfilter.Rd
man/label.class-class.Rd
man/Can.Rd
man/CheckDuplicate.Rd
man/DFO_plot.Rd
man/setup.Rd
man/multiData.Rd
man/Awatea2OM.Rd
man/getq_multi_MICE.Rd
man/optMSY_eq.Rd
man/plot.MMSE.Rd
man/Assess2OM.Rd
man/Imp-class.Rd
man/DFO_bar.Rd
man/ML2D.Rd
man/plot.Stock.Rd
man/getBlow.Rd
man/CheckOM.Rd
man/cv.Rd
man/boxplot.Data.Rd
man/WHAM2OM.Rd
man/Data-class.Rd
man/hrate.Rd
man/avail.Rd
man/runInMP.Rd
man/SS2DataMOM.Rd
man/popdynCPP.Rd
man/Uses.Rd
man/iSCAMinds.Rd
man/qestMICE.Rd
man/applyMMP.Rd
man/CombineMMP.Rd
man/NIL.Rd
man/genSizeCompWrap.Rd
man/MSYCalcs.Rd
man/Pplot2.Rd
man/LinInterp.Rd
man/DFO_hist.Rd
man/popdynOneMICE.Rd
man/Dom.Rd
man/multiMSE.Rd
man/popdynOneTScpp.Rd
man/calcMean.Rd
man/checkMSE.Rd
man/DataSlots.Rd
man/MPurl.Rd
man/OMexample.Rd
man/Imp-class-objects.Rd
man/OM-class.Rd
man/Data-class-objects.Rd
man/OM-class-objects.Rd
man/XL2Fleet.Rd
man/tinyErr.Rd
man/SampleObsPars.Rd
man/plot.MOM.Rd
man/Obs-class-objects.Rd
man/writeCSV.Rd
man/sample_steepness2.Rd
man/char.log-class.Rd
man/plot.Data.Rd
man/GenerateRandomWalk.Rd
man/DFO_tab_formatted.Rd
man/multidebug.Rd
man/Stock-class-objects.Rd
man/Report.Rd
man/popdynMICE.Rd
man/Kplot.Rd
man/MPtype.Rd
man/show-MSEtool.Rd
man/ObsDescription.Rd
man/L2A.Rd
man/Thresh_tab.Rd
man/DFO_proj.Rd
man/Taxa_Table.Rd
man/Hist-class.Rd
man/Choose.Rd
man/DataInit.Rd
man/SIL.Rd
man/XL2OM.Rd
man/Assess2MOM.Rd
man/Replace.Rd
man/Converge.Rd
man/SketchFun.Rd
man/ReqData.Rd
man/summary-MMSE.Rd
man/ChkYrs.Rd
man/summary-Data.Rd
man/LHdatabase.Rd
man/plotOFL.Rd
man/hist2.Rd
man/makeTransparent.Rd
man/prob.class-class.Rd
man/simmov.Rd
man/OneRep.Rd
man/FleetDescription.Rd
man/SampleStockPars.Rd
man/getEffhist.Rd
man/CheckMPs.Rd
man/applyMP.Rd
man/optQ.Rd
man/initialize-methods.Rd
man/DFO_plot2.Rd
man/iSCAM.Rd
man/VOIplot.Rd
man/SS2MOM.Rd
man/Sub.Rd
man/Rec-class.Rd
man/Stock-class.Rd
man/DataDescription.Rd
man/TAC.Rd
man/DLMDataDir.Rd
man/replic8.Rd
man/alphaconv.Rd
man/Cos_thresh_tab.Rd
man/ASAP2OM.Rd
man/show-Rec.Rd
man/Fease.Rd
man/dnormal.Rd
man/VOI.Rd
man/Pplot.Rd
man/Fleet-class.Rd
man/CalculateQ.Rd
man/join_plots.Rd
man/MSE-class.Rd
man/Cplot.Rd
man/makemov.Rd
man/getmov2.Rd
man/cparscheck.Rd
man/MOM-class-objects.Rd
man/plotquant.Rd
man/Turing.Rd
man/LH2OM.Rd
man/optYield.Rd
man/BlankSelPlot.Rd
man/Fleet-class-objects.Rd
man/iSCAM2OM.Rd
man/getDataList.Rd
man/Required.Rd
man/simCAL.Rd
man/Blow_opt.Rd
man/MSEextra.Rd
man/SampleCpars.Rd
man/makeMOM.Rd
man/show-MSE.Rd
man/DFO_spider.Rd
man/NOAA_plot.Rd
man/XL2Stock.Rd
man/HistMICE.Rd
man/SSBrefplot.Rd
man/PMobj-class.Rd
man/validcpars.Rd
man/HistDescription.Rd
man/getnIVs.Rd
man/calcProb.Rd
man/movestockCPP.Rd
man/CALsimp.Rd
man/MOM-class.Rd
man/SubCpars.Rd
man/movfit_Rcpp.Rd
man/Data2csv.Rd
man/summary-MSE.Rd
man/expandHerm.Rd
man/Data_xl.Rd
man/makeRel.Rd
man/runMP.Rd
man/MMSE-class.Rd
man/Input.Rd
man/DFO_report.Rd
man/MSEDescription.Rd
man/plotFun.Rd
man/iSCAMcomps.Rd
man/Range.Rd
man/SampleImpPars.Rd
man/VOI2.Rd
man/MPCalcsNAs.Rd
man/ImpDescription.Rd
man/Obs-class.Rd
man/PWhisker.Rd
man/SubOM.Rd
man/runMSE.Rd
man/CalcMPDynamics.Rd
man/simCAA.Rd
man/PMLimit.Rd
man/hconv.Rd
man/getclass.Rd
man/plotRel.Rd
man/DataDir.Rd
man/calcRefYield.Rd
man/PerformanceMetric.Rd
man/ldim.Rd
man/wormplot.Rd
man/TradePlot.Rd
man/SampleFleetPars.Rd
man/DFO_quant.Rd
man/TEG.Rd
man/OMdoc.Rd
man/plot.MSE.Rd
man/OMDescription.Rd
man/Sense.Rd
man/SimulatedData.Rd
man/FMSYref.Rd
man/getsel.Rd
man/joinData.Rd
man/optCPU.Rd
man/StockDescription.Rd
man/multiDataS.Rd
man/SS2Data.Rd
man/CSRAfunc.Rd
man/OMinit.Rd
man/RealFease.Rd
man/getAFC.Rd
man/XL2Data.Rd
man/NAor0.Rd
man/sdconv.Rd
man/CSRA.Rd
man/ResFromRel.Rd
man/Lag_Data.Rd
man/trlnorm.Rd
man/DFO_tab.Rd
man/runCOSEWIC.Rd
man/getfirstlev.Rd
man/plotmulti.Rd
man/figures/logo.png
