iSCAM: Reads iSCAM files into a hierarchical R list object

In MSEtool: Management Strategy Evaluation Toolkit

Reads iSCAM files into a hierarchical R list object

Description

Internal functions for reading iSCAM input and output files into R

Usage

load.iscam.files(model.dir, burnin = 1000, thin = 1, verbose = FALSE)

fetch.file.names(path, filename)

read.report.file(fn)

read.data.file(file = NULL, verbose = FALSE)

read.control.file(
  file = NULL,
  num.gears = NULL,
  num.age.gears = NULL,
  verbose = FALSE
)

read.projection.file(file = NULL, verbose = FALSE)

read.par.file(file = NULL, verbose = FALSE)

read.mcmc(model.dir = NULL, verbose = TRUE)

Arguments

model.dir	Folder name
burnin	The initial mcmc samples to be discarded
thin	The degree of chain thinning 1 in every thin iterations is kept
verbose	should detailed results be printed to console
path	File path
filename	The filename
fn	File location
file	File location
num.gears	The number of gears
num.age.gears	The number age-gears

Functions

• load.iscam.files(): Wrapper function to generate R list

• fetch.file.names(): A function for returning the three types of iSCAM input and output files

• read.report.file(): A function for returning the results of the .rep iscam file

• read.data.file(): A function for returning the results of the .dat iscam file

• read.control.file(): A function for returning the results of the iscam control file

• read.projection.file(): A function for returning the results of the iscam projection file

• read.par.file(): A function for returning the results of the iscam .par file

• read.mcmc(): A function for returning the results of the iscam mcmc files

Author(s)

Chris Grandin (DFO PBS)

See Also

iSCAM2OM

MSEtool documentation built on Sept. 30, 2024, 9:22 a.m.