Choose | R Documentation |
Interactive plots to specify trends and variability in fishing effort, fleet selectivity, and natural mortality for the operating model.
ChooseEffort(Fleet, Years = NULL)
ChooseM(OM, type = c("age", "length"), x = NULL, y = NULL)
ChooseSelect(Fleet, Stock, FstYr = NULL, SelYears = NULL)
Fleet |
A fleet object. |
Years |
An optional vector of years. Should be nyears long. |
OM |
An object of class 'OM' |
type |
A character string - is M to be mapped by 'age' or 'length'? |
x |
Optional vector for x-axis |
y |
Optional vector for y-axis |
Stock |
Optional Stock object. If provided, average length-at-maturity is included on plot for reference. |
FstYr |
Optional value for first historical year. If empty, user must specify the year in console. |
SelYears |
Optional vector of values for each year where selectivity pattern changed. If empty, user must specify the years in console (comma separated). |
ChooseEffort | Interactive plot which allows users to specify the relative trajectory and variability in the historical fishing effort and populates Fleet object. |
ChooseM | Interactive plot which allows users to specify M by age or size class |
ChooseSelect | Input the first historical year, and all years where selectivity pattern changed (separated by comma). Interactive plot which allows users to specify a range for the length at 5\ selectivity at maximum length for each year. Produces a simple plot which shows the range in selectivity pattern for each break-point year. Selectivity-at-length is fixed in between break-point years. Note that this function replaces 'nyears' in the Fleet object with the value defined here (FstYr:current year). |
ChooseEffort
and ChooseSelect
return a Fleet object while
ChooseM
returns an OM object.
A. Hordyk
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.