Description Usage Arguments Author(s)

Calls popdynOneMICE iteratively to reconstruct a time series given MICE model inputs

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | ```
popdynMICE(
qsx,
qfracx,
np,
nf,
nyears,
nareas,
maxage,
Nx,
VFx,
FretAx,
Effind,
movx,
Spat_targ,
M_ageArrayx,
Mat_agex,
Asizex,
Kx,
Linfx,
t0x,
Mx,
R0x,
R0ax,
SSBpRx,
hsx,
aRx,
bRx,
ax,
bx,
Perrx,
SRrelx,
Rel,
SexPars,
x,
plusgroup,
maxF,
SSB0x
)
``` |

`qsx` |
Total catchability |

`qfracx` |
Vector |

`np` |
Integer, the number of stocks |

`nf` |
Integer, number of fleets |

`nyears` |
Integer, number of historical years (unfished til today) |

`nareas` |
Integer, the number of spatial areas |

`maxage` |
Integer, maximum modeled age |

`Nx` |
Array |

`VFx` |
Array |

`FretAx` |
Array |

`Effind` |
Array |

`movx` |
Array |

`Spat_targ` |
Matrix |

`M_ageArrayx` |
Array |

`Mat_agex` |
Array |

`Asizex` |
Array |

`Kx` |
Vector |

`Mx` |
Vector |

`R0x` |
Vector |

`R0ax` |
Matrix |

`SSBpRx` |
Matrix |

`hsx` |
Vector |

`aRx` |
Vector |

`bRx` |
Vector |

`ax` |
Vector |

`bx` |
Vector |

`Perrx` |
Matrix |

`SRrelx` |
Integer vector |

`Rel` |
A list of inter-stock relationships see slot Rel of MOM object class |

`SexPars` |
A list of sex-specific relationships (SSBfrom, stock_age) |

`x` |
Integer the simulation number |

`Linf` |
Vector |

`t0` |
Vector |

T.Carruthers

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