popdynOneMICE | R Documentation |
Completes a single iteration of recruitment, mortality, fishing and movement given MICE model inputs
popdynOneMICE(
np,
nf,
nareas,
maxage,
Ncur,
Bcur,
SSBcur,
Vcur,
FMretx,
FMx,
PerrYrp,
hsx,
aRx,
bRx,
movy,
Spat_targ,
SRrelx,
M_agecur,
Mat_agecur,
Mat_agenext,
Fec_agenext,
Asizex,
Kx,
Linfx,
t0x,
Mx,
R0x,
R0ax,
SSBpRx,
ax,
bx,
Rel,
SexPars,
x,
plusgroup,
SSB0x,
B0x,
Len_agenext,
Wt_agenext,
SRRfun,
SRRpars,
ycur
)
np |
Integer, the number of stocks |
nf |
Integer, number of fleets |
nareas |
Integer, number of areas |
maxage |
Integer, maximum modelled age |
Ncur |
Array |
Bcur |
Array |
SSBcur |
Array |
Vcur |
Array |
FMretx |
Array |
FMx |
Array |
PerrYrp |
Vector |
hsx |
Vector |
aRx |
Vector |
bRx |
Vector |
movy |
Array |
Spat_targ |
Matrix |
SRrelx |
Integer vector |
M_agecur |
Matrix |
Mat_agecur |
Matrix |
Mat_agenext |
Matrix |
Fec_agenext |
Matrix |
Asizex |
Matrix |
Kx |
Vector |
Linfx |
Vector |
t0x |
Vector |
Mx |
Vector |
R0x |
Vector |
R0ax |
Matrix |
SSBpRx |
Matrix |
ax |
Vector |
bx |
Vector |
Rel |
A list of inter-stock relationships see slot Rel of MOM object class |
SexPars |
A list of sex-specific relationships (SSBfrom, stock_age) |
x |
Integer. The simulation number |
plusgroup |
Numeric vector. Use plus-group (1) or not (0) |
SSB0x |
Unfished SSB0, Vector |
B0x |
Unfished B0, Vector |
Len_agenext |
Matrix |
Wt_agenext |
Matrix |
SRRfun |
Optional. A stock-recruit function used if |
SRRpars |
Optional. A named list of arguments for |
ycur |
Integer. The current year of the simulation |
T.Carruthers
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