optQ | R Documentation |
Optimize q for a single simulation
optQ(
logQ,
depc,
SSB0c,
nareas,
maxage,
Ncurr,
pyears,
M_age,
Asize_c,
MatAge,
WtAge,
FecAge,
Vuln,
Retc,
Prec,
movc,
SRrelc,
Effind,
Spat_targc,
hc,
R0c,
SSBpRc,
aRc,
bRc,
maxF,
MPA,
plusgroup,
VB0c,
SBMSYc,
SRRfun,
SRRpars,
control,
spawn_time_frac = 0
)
logQ |
log q |
depc |
Depletion value |
SSB0c |
Unfished spawning biomass |
nareas |
Number of areas |
maxage |
Maximum age |
Ncurr |
Current N-at-age |
pyears |
Number of years to project population dynamics |
M_age |
M-at-age |
Asize_c |
Numeric vector (length nareas) with size of each area |
MatAge |
Maturity-at-age |
WtAge |
Weight-at-age |
FecAge |
Mature weight-at-age (relative fecundity) |
Vuln |
Vulnerability-at-age |
Retc |
Retention-at-age |
Prec |
Recruitment error by year |
movc |
movement matrix |
SRrelc |
SR parameter |
Effind |
Historical fishing effort |
Spat_targc |
Spatial targeting |
hc |
Steepness |
R0c |
Unfished recruitment by area |
SSBpRc |
Unfished spawning biomass per recruit by area |
aRc |
Ricker aR |
bRc |
Ricker bR |
maxF |
maximum F |
MPA |
A matrix of spatial closures by year |
plusgroup |
Integer. Default = 0 = no plus-group. Use 1 to include a plus-group |
VB0c |
Unfished vulnerable biomass |
SBMSYc |
Spawning biomass at MSY for simulation x |
control |
List. Control parameters including |
spawn_time_frac |
Fraction of the year when spawning occurs. Default = 0. |
A. Hordyk
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