Files in MetamapsDB

Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

README.md R/grepgraph.R R/koname.R R/setCypher.R R/taxonname.R R/contigInfo.R R/data.R R/contractMetab.R R/lca.R R/mdrMapping.R R/sqlTaxid.R R/findHomology.R R/threshold.R R/mapping.R R/path2kingdom.R R/setNodeProperties.R R/igraph2gexf.R R/annotate.R R/utils.R R/graphgraph_cpd.R R/listquery.R R/adjacentPairs.R R/prettifyGraph.R R/trio.R R/path2ko.R R/dbquery.R R/grepgraph_cpd.R R/pathways.R R/drawTaxonomicTree.R R/trioAnalysis.R R/findSeeds.R R/cpdname.R R/trio.local.R R/weird.R R/makedata.frame.R R/ig2ggplot.R man/grepReads.Rd man/listquery.Rd man/grepgraph.cpd.Rd man/buildE.Rd man/path2kingdom.Rd man/lca.Rd man/path2ko.Rd man/grepgraph.Rd man/connect.Rd man/mapContig.Rd man/simpleThres.Rd man/findPython.Rd man/pathways.Rd man/findPerl.Rd man/addKOProperty.Rd man/findTrios.Rd man/contigsSurvive.repeats.readNum.Rd man/findSeeds.Rd man/findHomology.Rd man/doublepipe.Rd man/scg.Rd man/index.Rd man/allTrios.Rd man/annotateContigs.taxonomy.Rd man/mdrRanges.Rd man/contigsSurvive.repeats.rpk.Rd man/rolling.Rd man/ksCal.Rd man/taxnam.sql.Rd man/grep.cDNA.Rd man/findtype.Rd man/dollarpipe.Rd man/categorize.Rd man/addContigProperty.Rd man/taxname.Rd man/lookupTable.Rd man/extractFromPath.Rd man/top500kos.Rd man/mappingInfo.Rd man/ko2path.Rd man/dbquery.Rd man/make.data.frame.Rd man/buildTree.Rd man/map.Rd man/findV.Rd man/readStatusReader.Rd man/adjacentPairs.Rd man/dynPlots.Rd man/simulated.Rd man/igraph2gexf.Rd man/prettifyGraph.Rd man/pipe.Rd man/koname.Rd man/plotClassification.Rd man/dynamicThreshold.Rd man/nitrogenMetab.Rd man/contractMetab.Rd man/grepgraph_cpd.Rd man/cpdname.Rd man/findNextKO.Rd man/findK.Rd man/mapReads2MDR.Rd man/surrNODES.Rd man/contigInfo.Rd man/ig2ggplot.Rd man/blatting.Rd