pruneByDP.AbstractCBS: Prunes the CN profile using dynamical programming

In PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Description

Prunes the CN profile using dynamical programming by specifying the target number of segments or alternative how of many change points to drop.

Usage

## S3 method for class 'AbstractCBS'
pruneByDP(fit, nbrOfSegments, ..., verbose=FALSE)

Arguments

nbrOfSegments	An integer specifying the number of segments after pruning. If negative, the it specifies the number of change points to drop.
...	Optional arguments passed to *seqOfSegmentsByDP().
verbose	See Verbose.

Value

Returns a pruned object of the same class.

Author(s)

Henrik Bengtsson, Pierre Neuvial

References

[1] ...

Examples

## Not run: 
 # Drop two segments
 fitP <- pruneByDP(fit, nbrOfSegments=-2)

## End(Not run)

PSCBS documentation built on Oct. 23, 2021, 9:09 a.m.