dataI: Reverse phase protein array rawdata, samples serially diluted

In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Reverse phase protein array rawdata, samples serially diluted

Description

The data Set is a list of four elements. Expression and background are matrices containing signal intensities, the data frames arraydescription and sampledescription comprising feature and phenodata.

Usage

data(dataI)

Format

list

Details

The data set is a list of four elements with data of a original reverse phase array experiment. The elements expression and background are 2304 times 26 matrices containing integers describing the signal intensities and local background for every spot of the experiment as generated with image analysis software. Arraydescription is a data frame, describing the incubation of every array refering the column of the expression and background matrix. Required rows are target and AB_ID with characters and array.id (four integers linked with "-"). Sampledescription is a data frame according to the rows of expression and background matrix and annotates the samples. Sampledescription requires the columns "ID", "sample_type", "sample", "concentration", and "dilution" as minimal information and "sample.n" to separate different sample groups.

Source

The data set contains original reverse phase protein array signals with randomized pheno and feature data.

Examples

data(dataI)
str(dataI)

RPPanalyzer documentation built on May 29, 2024, 5:43 a.m.