test.correlation: Tests for correlations in RPPA data

In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Tests for correlations in RPPA data

Description

Tests for correlation between protein expression value and any continuous data using cor.test.

Usage

test.correlation(x, param, method.cor = "kendall", 
	method.padj = "BH", file = "correlation_plot.pdf") 

Arguments

x	List containing RPPa data set
param	character describing the parameter
method.cor	character string describing the correlation
method.padj	character string describing the method for the p-value correction for multiple testing.
file	character string

Value

generates a pdf file

Author(s)

Heiko Mannsperger <[e-mail]>

See Also

For information about the argument method.cor see cor.test, informations about methods.padj can be found under p.adjust

Examples

## Not run: 
library(RPPanalyzer)
data(dataIII)
dataIII_median <- sample.median(dataIII)
test.correlation(dataIII_median,param="staging")


## End(Not run)

RPPanalyzer documentation built on Aug. 28, 2023, 5:07 p.m.