simpleBoxplot: Draws boxplots of groups of an RPPA data set.

In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Draws boxplots of groups of an RPPA data set.

Description

Draws boxplots of groups of an RPPA data set. Additionally a grouping order for plotting can be provided here.

Usage

simpleBoxplot(x, param, orderGrp=NULL, file = "boxplot_groups.pdf")

Arguments

x	List with RPPA data with aggregated replicate spots
param	Character value of one of the columns of the sampledescription matrix, i.e. x[[4]], describing the phenodata that should be analyzed
orderGrp	defines the ordering of the subgroups in param, i.e. vector of specifically ordered values of param
file	Title of the file that will be exported.

Value

Generates a PDF file

Author(s)

Silvia von der Heyde, Heiko Mannsperger

Examples

## Not run: 
library(RPPanalyzer)
	
data(dataIII)
dataIII_median <- sample.median(dataIII)
simpleBoxplot(x=dataIII_median, param="rank", 
	orderGrp=c("vx","zx","yzr","rxi"), file="simpleBoxplot.pdf")
    
## End(Not run)

RPPanalyzer documentation built on May 29, 2024, 5:43 a.m.