slidedescription.txt: slide description file
In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data
slidedescription.txt R Documentation
slide description file
Description
The slide description file contains all information concerning the arrays
of a reverse phase protein experiment.
Format
tab delimeted text file
Details
The slide description file contains information for array annotation and data analysis.
To find the GenePix result files (gpr files) in current working directory it
is neccesssary that the names of the gpr files are matching with the gpr column.
To identify the array on the slides the columns pad, slide, spotting_run, incubation_run
are obligatory. It is neccessary that every well that is spottet is described.
The columns sample_type and sample as well as concentration and
(for serially diluted samples) dilution are required for data analysis.
The columns target describes the analyzed proteins and AB_ID
contains a indentifier for the antibody used for the detection.
Any additionally column can be added to describe further phenodata of interest.
Source
The data set contains the incubation data from reverse phase protein arrays for
the HGF data set. These are 3 sample slides plus one slide for FCF normalization.
RPPanalyzer documentation built on Aug. 28, 2023, 5:07 p.m.
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| slidedescription.txt | R Documentation |
slide description file
Description
The slide description file contains all information concerning the arrays of a reverse phase protein experiment.
Format
tab delimeted text file
Details
The slide description file contains information for array annotation and data analysis.
To find the GenePix result files (gpr files) in current working directory it
is neccesssary that the names of the gpr files are matching with the gpr column.
To identify the array on the slides the columns pad, slide, spotting_run, incubation_run
are obligatory. It is neccessary that every well that is spottet is described.
The columns sample_type and sample as well as concentration and
(for serially diluted samples) dilution are required for data analysis.
The columns target describes the analyzed proteins and AB_ID
contains a indentifier for the antibody used for the detection.
Any additionally column can be added to describe further phenodata of interest.
Source
The data set contains the incubation data from reverse phase protein arrays for the HGF data set. These are 3 sample slides plus one slide for FCF normalization.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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