logList: Logarithmize (log2) the first two RPPA list elements, i.e....
In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

logList

R Documentation

Logarithmize (log2) the first two RPPA list elements, i.e. foreground and background signal intensities

Description

Function to logarithmize (log2) the first two RPPA list elements, i.e. foreground and background signal intensities.

Usage

  logList(x)

Arguments

`x`	list of 4 elements (`expression` and `background` data matrices, `arraydescription` and `sampledescription` data frames) according to `read.Data`

Value

x.log

list of 4 elements like the input but with log2 values of expression and background matrices

Author(s)

Silvia von der Heyde

Examples

## Not run: 
library(RPPanalyzer)

  
  
# input data
dataDir<-system.file("extdata",package="RPPanalyzer")
x<-dataPreproc(dataDir=dataDir, blocks=12, spot="aushon", exportNo=4)
x.norm<-x$normdat

# get log2 list 
x.log<-logList(x.norm)


## End(Not run)

RPPanalyzer documentation built on Aug. 28, 2023, 5:07 p.m.