logList: Logarithmize (log2) the first two RPPA list elements, i.e....

Description Usage Arguments Value Author(s) Examples

View source: R/logList.R

Description

Function to logarithmize (log2) the first two RPPA list elements, i.e. foreground and background signal intensities.

Usage

1
  logList(x)

Arguments

x

list of 4 elements (expression and background data matrices, arraydescription and sampledescription data frames) according to read.Data

Value

x.log

list of 4 elements like the input but with log2 values of expression and background matrices

Author(s)

Silvia von der Heyde

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
## Not run: 
library(RPPanalyzer)

  
  
# input data
dataDir<-system.file("extdata",package="RPPanalyzer")
x<-dataPreproc(dataDir=dataDir, blocks=12, spot="aushon", exportNo=4)
x.norm<-x$normdat

# get log2 list 
x.log<-logList(x.norm)


## End(Not run)

RPPanalyzer documentation built on Dec. 17, 2020, 5:10 p.m.