rppanalyzer-package: Read, annotate and normalize reverse phase protein array data...

In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Read, annotate and normalize reverse phase protein array data and get a brief overview on the biological impact.

Description

The package reads pheno and feature data of an RPPA experiment from textfiles and annotates the expression values in genepix result files (gpr files). For background correction the backgroundcorrect funktion from the limma package is used. After normalization data can be plotted to check quality control or to get a first impression on the biological relevance of the data set.

Author(s)

Maintainer: Heiko Mannsperger <[e-mail]>

Examples

## Not run: 
	data(dataI)
	
	bgcorrected <- correctBG(dataI)
	normalized <- normalizeRPPA(bgcorrected,method="proteinDye")
	aggregated <- sample.median(normalized)

## End(Not run)

RPPanalyzer documentation built on May 29, 2024, 5:43 a.m.