RPPanalyzer-package | R Documentation |
The package reads pheno and feature data of an RPPA experiment from textfiles and annotates the expression values in genepix result files (gpr files). For background correction the backgroundcorrect
funktion from the limma package is used. After normalization data can be plotted to check quality control or to get a first impression on the biological relevance of the data set.
Maintainer: Heiko Mannsperger <h.mannsperger@dkfz.de>
## Not run:
data(dataI)
bgcorrected <- correctBG(dataI)
normalized <- normalizeRPPA(bgcorrected,method="proteinDye")
aggregated <- sample.median(normalized)
## End(Not run)
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