plotQC: Plot target and blank signal from RPPA control samples

In RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Plot target and blank signal from RPPA control samples

Description

Plots target and blank signal from control samples of an RPPA data set in one plot. Exports pdf file.

Usage

plotQC(x, file = "target_vs_blank.pdf", arrays2rm = c("protein"))

Arguments

x	RPPA data list as output from read.Data
file	name of the PDF file
arrays2rm	character describing the arrays that dont have be plotted

Details

This function genrates scatter plots in a pdf file from not yet normalized, serially diluted control samples (annotated as control in the sample_type column of the sampledescription file) of RPPA data to get an impression of the antibody dynamic. An array with blank as target description is needed.

Value

generates a PDF file

Author(s)

Heiko Mannsperger <[e-mail]>

Examples

## Not run: 
library(RPPanalyzer)
data(dataIII)

plotQC(dataIII,file="plotQC.pdf")

## End(Not run)

RPPanalyzer documentation built on May 29, 2024, 5:43 a.m.