| do.mmc | R Documentation |
Maximum Margin Criterion (MMC) is a linear supervised dimension reduction method that maximizes average margin between classes. The cost function is defined as
trace(S_b - S_w)
where S_b is an overall variance of class mean vectors, and S_w refers to
spread of every class. Note that Principal Component Analysis (PCA) maximizes
total scatter, S_t = S_b + S_w.
do.mmc(X, label, ndim = 2)
X |
an |
label |
a length- |
ndim |
an integer-valued target dimension. |
a named Rdimtools S3 object containing
an (n\times ndim) matrix whose rows are embedded observations.
a (p\times ndim) whose columns are basis for projection.
name of the algorithm.
Kisung You
li_efficient_2006Rdimtools
## use iris data
data(iris, package="Rdimtools")
subid = sample(1:150, 50)
X = as.matrix(iris[subid,1:4])
label = as.factor(iris[subid,5])
## compare MMC with other methods
outMMC = do.mmc(X, label)
outMVP = do.mvp(X, label)
outPCA = do.pca(X)
## visualize
opar <- par(no.readonly=TRUE)
par(mfrow=c(1,3))
plot(outMMC$Y, pch=19, col=label, main="MMC")
plot(outMVP$Y, pch=19, col=label, main="MVP")
plot(outPCA$Y, pch=19, col=label, main="PCA")
par(opar)
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