FRiP: Calculate fraction of reads in peaks per cell

In Signac: Analysis of Single-Cell Chromatin Data

Calculate fraction of reads in peaks per cell

Description

Calculate fraction of reads in peaks per cell

Usage

FRiP(object, assay, total.fragments, col.name = "FRiP", verbose = TRUE)

Arguments

object	A Seurat object
assay	Name of the assay containing a peak x cell matrix
total.fragments	Name of a metadata column containing the total number of sequenced fragments for each cell. This can be computed using the CountFragments function.
col.name	Name of column in metadata to store the FRiP information.
verbose	Display messages

Value

Returns a Seurat object

Examples

FRiP(object = atac_small, assay = 'peaks', total.fragments = "fragments")

Signac documentation built on Sept. 11, 2024, 9:30 p.m.