subset.Fragment: Subset a Fragment object

In Signac: Analysis of Single-Cell Chromatin Data

Subset a Fragment object

Description

Returns a subset of a Fragment-class object.

Usage

## S3 method for class 'Fragment'
subset(x, cells = NULL, ...)

Arguments

x	A Fragment object
cells	Vector of cells to retain
...	Arguments passed to other methods

Value

Returns a subsetted Fragment object

See Also

subset

Examples

fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
cells <- colnames(x = atac_small)
names(x = cells) <- paste0("test_", cells)
frags <- CreateFragmentObject(path = fpath, cells = cells, verbose = FALSE, tolerance = 0.5)
subset(frags, head(names(cells)))

Signac documentation built on Nov. 8, 2023, 5:07 p.m.