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SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells
Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. 'SuperCell' uses 'velocyto.R' <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity and 'WeightedCluster' <doi:10.12682/lives.2296-1658.2013.24> <https://mephisto.unige.ch/weightedcluster/> for weighted clustering on metacells. We also recommend installing 'scater' Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.
Getting started
Browse package contents
Package details |
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|---|---|
| Author | Mariia Bilous [aut], Matei Teleman [cre] |
| Bioconductor views | Software |
| Maintainer | Matei Teleman <matei.teleman@unil.ch> |
| License | GPL-3 |
| Version | 1.2 |
| Package repository | View on CRAN |
| Installation |
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