supercell_plot_UMAP: Plot super-cell UMAP (Use supercell_DimPlot instead) Plots...

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Plot super-cell UMAP (Use supercell_DimPlot instead) Plots super-cell UMAP (result of supercell_UMAP)

Description

Plot super-cell UMAP (Use supercell_DimPlot instead) Plots super-cell UMAP (result of supercell_UMAP)

Usage

supercell_plot_UMAP(
  SC,
  groups,
  UMAP_name = "SC_UMAP",
  color.use = NULL,
  asp = 1,
  alpha = 0.7,
  title = NULL
)

Arguments

SC	super-cell structure (output of SCimplify) with a field UMAP_name containing UMAP result
groups	coloring metacells by groups
UMAP_name	the mane of the field containing UMAP result
color.use	colors of groups
asp	plot aspect ratio
alpha	transparency of
title	title of the plot

Value

ggplot

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.