supercell_VlnPlot_single: Plot Violin plot for 1 feature

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Plot Violin plot for 1 feature

Description

Used for supercell_VlnPlot

Usage

supercell_VlnPlot_single(
  ge1,
  supercell_size = NULL,
  clusters,
  feature = NULL,
  color.use = NULL,
  pt.size = 0,
  pch = "o",
  y.max = NULL,
  y.min = NULL,
  adjust = 1,
  angle.text.y = 90,
  angle.text.x = 45
)

Arguments

ge1	a gene expression vector (same length as number of super-cells)
supercell_size	a vector with supercell size (ordered the same way as in ge)
clusters	a vector with clustering information (ordered the same way as in ge)
feature	gene to plot
color.use	colors for idents
pt.size	point size (0 by default)
pch	shape of jitter dots
y.max	max of y axis
y.min	min of y axis
adjust	param of geom_violin
angle.text.y	rotation of y text
angle.text.x	rotation of x text

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.