supercell_UMAP: Compute UMAP of super-cells
In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells
View source: R/supercell_UMAP.R
supercell_UMAP R Documentation
Compute UMAP of super-cells
Description
Computes UMAP of super-cells
Usage
supercell_UMAP(SC, PCA_name = "SC_PCA", n.comp = NULL, n_neighbors = 15, ...)
Arguments
SC
super-cell structure (output of SCimplify) with a field PCA_name containing PCA result
PCA_name
name of SC field containing result of supercell_prcomp
n.comp
number of vector of principal components to use for computing UMAP
n_neighbors
number of neighbors (parameter of umap)
...
other parameters of umap
Value
umap result
SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.
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View source: R/supercell_UMAP.R
| supercell_UMAP | R Documentation |
Compute UMAP of super-cells
Description
Computes UMAP of super-cells
Usage
supercell_UMAP(SC, PCA_name = "SC_PCA", n.comp = NULL, n_neighbors = 15, ...)
Arguments
SC |
super-cell structure (output of SCimplify) with a field |
PCA_name |
name of |
n.comp |
number of vector of principal components to use for computing UMAP |
n_neighbors |
number of neighbors (parameter of umap) |
... |
other parameters of umap |
Value
umap result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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