supercell_tSNE: Compute tSNE of super-cells

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Compute tSNE of super-cells

Description

Computes tSNE of super-cells

Usage

supercell_tSNE(
  SC,
  PCA_name = "SC_PCA",
  n.comp = NULL,
  perplexity = 30,
  seed = 12345,
  ...
)

Arguments

SC	super-cell structure (output of SCimplify) with a field PCA_name containig PCA result
PCA_name	name of SC field containing result of supercell_prcomp
n.comp	number of vector of principal components to use for computing tSNE
perplexity	perplexity parameter (parameter of Rtsne)
seed	random seed
...	other parameters of Rtsne

Value

Rtsne result

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.