supercell_plot_GE: Plot super-cell NW colored by an expression of a gene...

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Plot super-cell NW colored by an expression of a gene (gradient color)

Description

Plot super-cell NW colored by an expression of a gene (gradient color)

Usage

supercell_plot_GE(
  SC.nw,
  ge,
  color.use = c("gray", "blue"),
  n.color.gradient = 10,
  main = NA,
  legend.side = 4,
  gene.name = NULL,
  ...
)

Arguments

SC.nw	a super-cell network (a field supercell_network of the output of SCimplify)
ge	a gene expression vector (same length as number of super-cells)
color.use	colors of gradient
n.color.gradient	number of bins of the gradient, default is 10
main	plot title
legend.side	a side parameter of gradientLegend function (default is 4)
gene.name	name of gene of for which gene expression is plotted
...	rest of the parameters of supercell_plot function

Value

plot of a super-cell network with color representing an expression level

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.