SCimplify_for_velocity: Construct super-cells from spliced and un-spliced matrices

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Construct super-cells from spliced and un-spliced matrices

Description

Construct super-cells from spliced and un-spliced matrices

Usage

SCimplify_for_velocity(emat, nmat, gamma = NULL, membership = NULL, ...)

Arguments

emat	spliced (exonic) count matrix
nmat	unspliced (nascent) count matrix
gamma	graining level of data (proportion of number of single cells in the initial dataset to the number of super-cells in the final dataset)
membership	metacell membership vector (if provided, will be used for emat, nmat metacell matrices averaging)
...	other parameters from SCimplify

Value

list containing vector of membership, spliced count and un-spliced count matrices

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.