supercell_GeneGenePlot_single: Plot Gene-gene correlation plot for 1 feature

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Plot Gene-gene correlation plot for 1 feature

Description

Used for supercell_GeneGenePlot

Usage

supercell_GeneGenePlot_single(
  ge_x,
  ge_y,
  gene_x_name,
  gene_y_name,
  supercell_size = NULL,
  clusters = NULL,
  color.use = NULL,
  x.max = NULL,
  y.max = NULL,
  pt.size = 1,
  alpha = 0.9
)

Arguments

ge_x	first gene expression vector (same length as number of super-cells)
ge_y	second gene expression vector (same length as number of super-cells)
gene_x_name	name of gene x
gene_y_name	name of gene y
supercell_size	a vector with supercell size (ordered the same way as in ge)
clusters	a vector with clustering information (ordered the same way as in ge)
color.use	colors for idents
x.max	max of x axis
y.max	max of y axis
pt.size	point size (0 by default)
alpha	transparency of dots

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.