supercell_plot_tSNE: Plot super-cell tSNE (Use supercell_DimPlot instead) Plots...

In SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells

Plot super-cell tSNE (Use supercell_DimPlot instead) Plots super-cell tSNE (result of supercell_tSNE)

Description

Plot super-cell tSNE (Use supercell_DimPlot instead) Plots super-cell tSNE (result of supercell_tSNE)

Usage

supercell_plot_tSNE(
  SC,
  groups,
  tSNE_name = "SC_tSNE",
  color.use = NULL,
  asp = 1,
  alpha = 0.7,
  title = NULL
)

Arguments

SC	super-cell structure (output of SCimplify) with a field tSNE_name containing tSNE result
groups	coloring metacells by groups
tSNE_name	the mane of the field containing tSNE result
color.use	colors of groups
asp	plot aspect ratio
alpha	transparency of
title	title of the plot

Value

ggplot

SuperCell documentation built on Oct. 25, 2024, 5:07 p.m.