Files in batchtools

Tools for Computation on Batch Systems

NEWS.md README.md R/ExperimentRegistry.R R/resetJobs.R R/Joins.R R/Algorithm.R R/mergeRegistries.R R/unwrap.R R/clusterFunctionsTORQUE.R R/config.R R/clusterFunctionsSocket.R R/batchMapResults.R R/Export.R R/findJobs.R R/btlapply.R R/execJob.R R/clearRegistry.R R/removeExperiments.R R/clusterFunctionsInteractive.R R/clusterFunctionsSSH.R R/clusterFunctionsLSF.R R/clusterFunctionsOpenLava.R R/ids.R R/updateRegisty.R R/getDefaultRegistry.R R/waitForFiles.R R/clusterFunctionsMulticore.R R/submitJobs.R R/Tags.R R/loadRegistry.R R/RDSReader.R R/getErrorMessages.R R/sweepRegistry.R R/clusterFunctionsDocker.R R/saveRegistry.R R/summarizeExperiments.R R/Logs.R R/testJob.R R/JobNames.R R/clusterFunctionsSlurm.R R/Job.R R/waitForJobs.R R/Worker.R R/clusterFunctions.R R/reduceResults.R R/clusterFunctionsSGE.R R/JobTables.R R/files.R R/Registry.R R/chunkIds.R R/Problem.R R/getStatus.R R/JobCollection.R R/removeRegistry.R R/syncRegistry.R R/killJobs.R R/sleep.R R/batchMap.R R/zzz.R R/estimateRuntimes.R R/addExperiments.R R/batchReduce.R R/helpers.R R/runOSCommand.R R/Hooks.R R/doJobCollection.R R/loadResult.R inst/doc/batchtools.Rmd inst/doc/batchtools.R tests/testthat.R tests/testthat/test_seed.R tests/testthat/test_ExperimentRegistry.R tests/testthat/test_doJobCollection.R tests/testthat/test_findJobs.R tests/testthat/test_reduceResults.R tests/testthat/test_JobNames.R tests/testthat/test_unwrap.R tests/testthat/test_getErrorMessages.R tests/testthat/test_submitJobs.R tests/testthat/test_joins.R tests/testthat/test_getStatus.R tests/testthat/test_foreach.R tests/testthat/test_parallelMap.R tests/testthat/test_export.R tests/testthat/test_showLog.R tests/testthat/test_runOSCommand.R tests/testthat/test_JobCollection.R tests/testthat/test_sweepRegistry.R tests/testthat/test_sleep.R tests/testthat/test_future.R tests/testthat/test_addExperiments.R tests/testthat/test_Problem.R tests/testthat/test_removeExperiments.R tests/testthat/test_tags.R tests/testthat/test_waitForJobs.R tests/testthat/test_ClusterFunctionsSocket.R tests/testthat/test_grepLogs.R tests/testthat/test_resetJobs.R tests/testthat/test_batchReduce.R tests/testthat/test_summarizeExperiments.R tests/testthat/helper.R tests/testthat/test_removeRegistry.R tests/testthat/test_estimateRuntimes.R tests/testthat/test_killJobs.R tests/testthat/test_memory.R tests/testthat/test_Job.R tests/testthat/test_Algorithm.R tests/testthat/test_btlapply.R tests/testthat/test_ClusterFunctions.R tests/testthat/test_batchMap.R tests/testthat/test_manual.R tests/testthat/test_testJob.R tests/testthat/test_findConfFile.R tests/testthat/test_chunk.R tests/testthat/test_mergeRegistries.R tests/testthat/test_ClusterFunctionsMulticore.R tests/testthat/test_ClusterFunctionsSSH.R tests/testthat/test_count.R tests/testthat/test_getJobTable.R tests/testthat/test_convertIds.R tests/testthat/test_Registry.R tests/testthat/test_hooks.R vignettes/tikz_prob_algo_simple.pdf vignettes/batchtools.Rmd vignettes/function_overview.pdf man/JoinTables.Rd man/runHook.Rd man/makeClusterFunctionsSGE.Rd man/makeClusterFunctionsDocker.Rd man/makeSubmitJobResult.Rd man/JobNames.Rd man/makeClusterFunctions.Rd man/summarizeExperiments.Rd man/Worker.Rd man/addAlgorithm.Rd man/testJob.Rd man/reduceResults.Rd man/doJobCollection.Rd man/JobExperiment.Rd man/cfKillJob.Rd man/clearRegistry.Rd man/findConfFile.Rd man/makeClusterFunctionsSocket.Rd man/removeRegistry.Rd man/batchExport.Rd man/addProblem.Rd man/makeClusterFunctionsTORQUE.Rd man/makeClusterFunctionsInteractive.Rd man/chunk.Rd man/submitJobs.Rd man/batchtools-package.Rd man/showLog.Rd man/loadRegistry.Rd man/batchReduce.Rd man/sweepRegistry.Rd man/unwrap.Rd man/getErrorMessages.Rd man/addExperiments.Rd man/resetJobs.Rd man/findTemplateFile.Rd man/getStatus.Rd man/makeClusterFunctionsSSH.Rd man/cfBrewTemplate.Rd man/killJobs.Rd man/makeRegistry.Rd man/makeClusterFunctionsLSF.Rd man/makeClusterFunctionsSlurm.Rd man/estimateRuntimes.Rd man/Tags.Rd man/saveRegistry.Rd man/syncRegistry.Rd man/reduceResultsList.Rd man/waitForJobs.Rd man/grepLogs.Rd man/getDefaultRegistry.Rd man/btlapply.Rd man/batchMapResults.Rd man/makeClusterFunctionsMulticore.Rd man/execJob.Rd man/makeClusterFunctionsOpenLava.Rd man/makeExperimentRegistry.Rd man/loadResult.Rd man/removeExperiments.Rd man/assertRegistry.Rd man/JobCollection.Rd man/findJobs.Rd man/cfReadBrewTemplate.Rd man/batchMap.Rd man/runOSCommand.Rd man/getJobTable.Rd man/cfHandleUnknownSubmitError.Rd