aaseqtab2: Summary of amino acid sequences of B cells of another...
In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data
Description
Usage
Format
References
Examples
Description
Data frame represents an output from IMGT/HighV-QUEST, file 5_AA-sequences(...).txt
Usage
1
data("aaseqtab2")
Format
A data frame with 3000 observations on the following 18 variables.
Sequence_numbera numeric vector
Sequence_IDa character vector
Functionalitya character vector
V_GENE_and_allelea character vector
J_GENE_and_allelea character vector
D_GENE_and_allelea character vector
V_D_J_REGIONa character vector
V_J_REGIONa character vector
V_REGIONa character vector
FR1_IMGTa character vector
CDR1_IMGTa character vector
FR2_IMGTa character vector
CDR2_IMGTa character vector
FR3_IMGTa character vector
CDR3_IMGTa character vector
JUNCTIONa character vector
J_REGIONa character vector
FR4_IMGTa character vector
References
Alamyar, E. et al., IMGT/HighV-QUEST: A High-Throughput System and Web Portal for the Analysis of Rearranged Nucleotide Sequences of Antigen Receptors, JOBIM 2010, Paper 63 (2010).
Brochet, X. et al., Nucl. Acids Res. 36, W503-508 (2008). PMID: 18503082
IMGT/HighV-QUEST 5_AA-sequences file description: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#EAA
Examples
1
2
bcRep documentation built on May 2, 2019, 5:14 a.m.
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Description Usage Format References Examples
Description
Data frame represents an output from IMGT/HighV-QUEST, file 5_AA-sequences(...).txt
Usage
1 | data("aaseqtab2")
|
Format
A data frame with 3000 observations on the following 18 variables.
Sequence_numbera numeric vector
Sequence_IDa character vector
Functionalitya character vector
V_GENE_and_allelea character vector
J_GENE_and_allelea character vector
D_GENE_and_allelea character vector
V_D_J_REGIONa character vector
V_J_REGIONa character vector
V_REGIONa character vector
FR1_IMGTa character vector
CDR1_IMGTa character vector
FR2_IMGTa character vector
CDR2_IMGTa character vector
FR3_IMGTa character vector
CDR3_IMGTa character vector
JUNCTIONa character vector
J_REGIONa character vector
FR4_IMGTa character vector
References
Alamyar, E. et al., IMGT/HighV-QUEST: A High-Throughput System and Web Portal for the Analysis of Rearranged Nucleotide Sequences of Antigen Receptors, JOBIM 2010, Paper 63 (2010).
Brochet, X. et al., Nucl. Acids Res. 36, W503-508 (2008). PMID: 18503082
IMGT/HighV-QUEST 5_AA-sequences file description: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#EAA
Examples
1 2 |
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