vgenes: VH gene usage data

In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data

Description

VH gene usage data of 10 samples (rows) and 30 genes (columns).

Usage

data("vgenes")

Format

The format is: num [1:10, 1:30] 0.0628 0.0529 0.0248 0.0512 0.0184 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:10] "Sample1" "Sample2" "Sample3" "Sample4" ... ..$ : chr [1:30] "IGHV4-34" "IGHV1-8" "IGHV1-3" "IGHV3-23" ...

Examples

data(vgenes)
str(vgenes)
barplot(t(vgenes), col = rainbow(n = ncol(vgenes),start=0.2, end = 0.9), 
     xlim = c(0, nrow(vgenes)+5), ylab="proportion", 
     main="VH gene usage", las=3)
legend("right",col = rainbow(n = ncol(vgenes)), colnames(vgenes), pch=15)

bcRep documentation built on May 2, 2019, 5:14 a.m.