summarytab: Summary information of B cells of one individual
In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data
Description
Usage
Format
References
Examples
Description
Data frame represents an output from IMGT/HighV-QUEST, file 1_Summary(...).txt
Usage
1
data("summarytab")
Format
A data frame with 3000 observations on the following 29 variables.
Sequence_numbera numeric vector
Sequence_IDa character vector
Functionalitya character vector
V_GENE_and_allelea character vector
V_REGION_scorea numeric vector
V_REGION_identity_%a numeric vector
V_REGION_identity_nta character vector
V_REGION_identity_%_(with_ins/del_events)a numeric vector
V_REGION_identity_nt_(with_ins/del_events)a character vector
J_GENE_and_allelea character vector
J_REGION_scorea numeric vector
J_REGION_identity_%a numeric vector
J_REGION_identity_nta character vector
D_GENE_and_allelea character vector
D_REGION_reading_framea numeric vector
CDR1_IMGT_lengtha numeric vector
CDR2_IMGT_lengtha character vector
CDR3_IMGT_lengtha character vector
CDR_IMGT_lengthsa character vector
FR_IMGT_lengthsa character vector
AA_JUNCTIONa character vector
JUNCTION_framea character vector
Orientationa character vector
Functionality_commenta character vector
V_REGION_potential_ins/dela character vector
J_GENE_and_allele_commenta character vector
V_REGION_insertionsa character vector
V_REGION_deletionsa character vector
Sequencea character vector
References
Alamyar, E. et al., IMGT/HighV-QUEST: A High-Throughput System and Web Portal for the Analysis of Rearranged Nucleotide Sequences of Antigen Receptors, JOBIM 2010, Paper 63 (2010).
Brochet, X. et al., Nucl. Acids Res. 36, W503-508 (2008). PMID: 18503082
IMGT/HighV-QUEST 1_Summary file description: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#Esummary
Examples
1
2
bcRep documentation built on May 2, 2019, 5:14 a.m.
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Description Usage Format References Examples
Description
Data frame represents an output from IMGT/HighV-QUEST, file 1_Summary(...).txt
Usage
1 | data("summarytab")
|
Format
A data frame with 3000 observations on the following 29 variables.
Sequence_numbera numeric vector
Sequence_IDa character vector
Functionalitya character vector
V_GENE_and_allelea character vector
V_REGION_scorea numeric vector
V_REGION_identity_%a numeric vector
V_REGION_identity_nta character vector
V_REGION_identity_%_(with_ins/del_events)a numeric vector
V_REGION_identity_nt_(with_ins/del_events)a character vector
J_GENE_and_allelea character vector
J_REGION_scorea numeric vector
J_REGION_identity_%a numeric vector
J_REGION_identity_nta character vector
D_GENE_and_allelea character vector
D_REGION_reading_framea numeric vector
CDR1_IMGT_lengtha numeric vector
CDR2_IMGT_lengtha character vector
CDR3_IMGT_lengtha character vector
CDR_IMGT_lengthsa character vector
FR_IMGT_lengthsa character vector
AA_JUNCTIONa character vector
JUNCTION_framea character vector
Orientationa character vector
Functionality_commenta character vector
V_REGION_potential_ins/dela character vector
J_GENE_and_allele_commenta character vector
V_REGION_insertionsa character vector
V_REGION_deletionsa character vector
Sequencea character vector
References
Alamyar, E. et al., IMGT/HighV-QUEST: A High-Throughput System and Web Portal for the Analysis of Rearranged Nucleotide Sequences of Antigen Receptors, JOBIM 2010, Paper 63 (2010).
Brochet, X. et al., Nucl. Acids Res. 36, W503-508 (2008). PMID: 18503082
IMGT/HighV-QUEST 1_Summary file description: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#Esummary
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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