Description Usage Arguments Value Author(s) References See Also Examples
Filter IMGT/HighV-QUEST output files for in-frame or out-of-frame sequences.
sequences.getInFrames
filters only in-frame sequences
sequences.getOutOfFrames
filters only out-of-frame sequences
sequences.getAnyJunctionFrame
filters all sequences with any junction frame information (in-frame or out-of-frame)
1 2 3 4 5 |
data |
IMGT/HighV-QUEST output file with junction frame information, e.g. 1_Summary().txt, ... |
Output is a data frame with the same columns like the input, but filtered for only in-frame or out-of-frame sequences or sequences having any junction frame information.
Julia Bischof
IMGT/LIGM-DB labels: http://www.imgt.org/ligmdb/label
IMGT/HighV-QUEST definition of functionality (and junction frame): http://www.imgt.org/IMGTScientificChart/SequenceDescription/IMGTfunctionality.html#func
sequences.getAnyJunctionFrame
, sequences.getInFrames
, sequences.getOutOfFrames
,
sequences.junctionFrame
, sequences.getAnyFunctionality
, sequences.getProductives
,
1 2 3 4 | data(summarytab)
InFrameSequences<-sequences.getInFrames(summarytab)
OutOfFrameSequences<-sequences.getOutOfFrames(summarytab)
AnyJunctionFrSequences<-sequences.getAnyJunctionFrame(summarytab)
|
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