clones.filterJunctionFrame: Filter for in-frame/out-of-frame clones

In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data

Description

Clones containing only in-frame or only out-of-frame sequences can be filtered.

Usage

clones.filterJunctionFrame(clones.tab = NULL, 
     filter = c("in-frame", "out-of-frame"))

Arguments

clones.tab	A data frame containing clones and their characteristics
filter	Filter feature

Value

Output is a data frame, that contains clones with only in-frame or out-of-frame sequences.

Author(s)

Julia Bischof

References

IMGT/LIGM-DB labels: http://www.imgt.org/ligmdb/label

IMGT/HighV-QUEST definition of functionality (and junction frame): http://www.imgt.org/IMGTScientificChart/SequenceDescription/IMGTfunctionality.html#func

See Also

clones.filterFunctionality, clones.filterSize

Examples

data(clones.ind)

inFrameClones<-clones.filterJunctionFrame(clones.tab = clones.ind, 
     filter = "in-frame")

bcRep documentation built on May 2, 2019, 5:14 a.m.