Description Usage Format References Examples
Data frame represents an output from IMGT/HighV-QUEST, file 3_Nt-sequences(...).txt
1 | data("ntseqtab")
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A data frame with 3000 observations on the following 114 variables.
Sequence_number
a numeric vector
Sequence_ID
a character vector
Functionality
a character vector
V_GENE_and_allele
a character vector
J_GENE_and_allele
a character vector
D_GENE_and_allele
a character vector
V_D_J_REGION
a character vector
V_J_REGION
a character vector
V_REGION
a character vector
FR1_IMGT
a character vector
CDR1_IMGT
a character vector
FR2_IMGT
a character vector
CDR2_IMGT
a character vector
FR3_IMGT
a character vector
CDR3_IMGT
a character vector
JUNCTION
a character vector
3V_REGION
a character vector
(N_D)_J_REGION
a character vector
(N_D)_REGION
a character vector
P3V
a character vector
N_REGION
a character vector
N1_REGION
a character vector
P5D
a character vector
D_REGION
a character vector
P3D
a character vector
P5D1
a logical vector
D1_REGION
a character vector
P3D1
a character vector
N2_REGION
a character vector
P5D2
a character vector
D2_REGION
a character vector
P3D2
a character vector
N3_REGION
a character vector
P5D3
a character vector
D3_REGION
a character vector
P3D3
a character vector
N4_REGION
a character vector
P5J
a character vector
5J_REGION
a character vector
D_J_REGION
a character vector
J_REGION
a character vector
FR4_IMGT
a character vector
V_D_J_REGION_start
a numeric vector
V_D_J_REGION_end
a numeric vector
V_J_REGION_start
a numeric vector
V_J_REGION_end
a logical vector
V_REGION_start
a numeric vector
V_REGION_end
a numeric vector
FR1_IMGT_start
a numeric vector
FR1_IMGT_end
a numeric vector
CDR1_IMGT_start
a numeric vector
CDR1_IMGT_end
a numeric vector
FR2_IMGT_start
a numeric vector
FR2_IMGT_end
a numeric vector
CDR2_IMGT_start
a numeric vector
CDR2_IMGT_end
a numeric vector
FR3_IMGT_start
a numeric vector
FR3_IMGT_end
a numeric vector
CDR3_IMGT_start
a numeric vector
CDR3_IMGT_end
a numeric vector
JUNCTION_start
a numeric vector
JUNCTION_end
a numeric vector
3V_REGION_start
a numeric vector
3V_REGION_end
a numeric vector
(N_D)_J_REGION_start
a numeric vector
(N_D)_J_REGION_end
a numeric vector
(N_D)_REGION_start
a numeric vector
(N_D)_REGION_end
a numeric vector
P3V_start
a numeric vector
P3V_end
a numeric vector
N_REGION_start
a numeric vector
N_REGION_end
a numeric vector
N1_REGION_start
a numeric vector
N1_REGION_end
a numeric vector
P5D_start
a numeric vector
P5D_end
a numeric vector
D_REGION_start
a numeric vector
D_REGION_end
a numeric vector
P3D_start
a numeric vector
P3D_end
a numeric vector
P5D1_start
a numeric vector
P5D1_end
a numeric vector
D1_REGION_start
a numeric vector
D1_REGION_end
a numeric vector
P3D1_start
a numeric vector
P3D1_end
a numeric vector
N2_REGION_start
a numeric vector
N2_REGION_end
a numeric vector
P5D2_start
anumeric vector
P5D2_end
a numeric vector
D2_REGION_start
a numeric vector
D2_REGION_end
a numeric vector
P3D2_start
a numeric vector
P3D2_end
a numeric vector
N3_REGION_start
a numeric vector
N3_REGION_end
a numeric vector
P5D3_start
a numeric vector
P5D3_end
a numeric vector
D3_REGION_start
a numeric vector
D3_REGION_end
a numeric vector
P3D3_start
a numeric vector
P3D3_end
a numeric vector
N4_REGION_start
a numeric vector
N4_REGION_end
a numeric vector
P5J_start
a numeric vector
P5J_end
a numeric vector
5J_REGION_start
a numeric vector
5J_REGION_end
a numeric vector
D_J_REGION_start
a numeric vector
D_J_REGION_end
a numeric vector
J_REGION_start
a numeric vector
J_REGION_end
a numeric vector
FR4_IMGT_start
a numeric vector
FR4_IMGT_end
a numeric vector
Alamyar, E. et al., IMGT/HighV-QUEST: A High-Throughput System and Web Portal for the Analysis of Rearranged Nucleotide Sequences of Antigen Receptors, JOBIM 2010, Paper 63 (2010).
Brochet, X. et al., Nucl. Acids Res. 36, W503-508 (2008). PMID: 18503082
IMGT/HighV-QUEST 3_Nt-sequences file description: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#Ent
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