readIMGT: Read IMGT/HighV-QUEST output files

In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data

Description

This function reads IMGT/HighV-QUEST output files into a data frame.

Usage

readIMGT(data, filterNoResults = TRUE)

Arguments

data	path and file name of IMGT/HighV-QUEST output file
filterNoResults	Shall sequences without any information be excluded? (default: TRUE)

Details

"-" or spaces are be converted to "_" (single quotes are ignored).

Value

Output is a data frame containing IMGT/HighV-QUEST output data.

Author(s)

Julia Bischof

References

IMGT/V-QUEST Documentation: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#output3

Examples

## Not run: 
tab<-readIMGT("PathTo/file.txt",filterNoResults=TRUE)
str(tab)

## End(Not run)

bcRep documentation built on May 2, 2019, 5:14 a.m.