mutationtab: Summary of mutations cells

In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data

Description

Data frame represents an output from IMGT/HighV-QUEST, file 7_V-REGION-mutation-and-AA-change-table(...).txt

Usage

data("mutationtab")

Format

A data frame with 3000 observations on the following 11 variables.

Sequence_number

a numeric vector

Sequence_ID

a character vector

Functionality

a character vector

V_GENE_and_allele

a character vector

V_REGION

a character vector

FR1_IMGT

a character vector

CDR1_IMGT

a character vector

FR2_IMGT

a character vector

CDR2_IMGT

a character vector

FR3_IMGT

a character vector

CDR3_IMGT

a character vector

References

Alamyar, E. et al., IMGT/HighV-QUEST: A High-Throughput System and Web Portal for the Analysis of Rearranged Nucleotide Sequences of Antigen Receptors, JOBIM 2010, Paper 63 (2010).

Brochet, X. et al., Nucl. Acids Res. 36, W503-508 (2008). PMID: 18503082

IMGT/HighV-QUEST 7_V-REGION-mutation-and-AA-change-table file description: http://www.imgt.org/IMGT_vquest/share/textes/imgtvquest.html#Emuttable

Examples

data(mutationtab)
str(mutationtab)

bcRep documentation built on May 2, 2019, 5:14 a.m.