clones.allind: B cell clones of 8 individuals

In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data

Description

This data frame represents the combined ouput of the function clones() for 7 individuals (in total 2948 clones).

Usage

data("clones.allind")

Format

A data frame with 5286 observations on the following 15 variables.

samples

a factor with 8 levels

unique_CDR3_sequences_AA

a character vector

CDR3_length_AA

a numeric vector

number_of_unique_sequences

a numeric vector

total_number_of_sequences

a numeric vector

sequence_count_per_CDR3

a character vector

V_gene

a character vector

V_gene_and_allele

a character vector

J_gene

a character vector

J_gene_and_allele

a character vector

D_gene

a character vector

all_CDR3_sequences_AA

a character vector

all_CDR3_sequences_nt

a character vector

Functionality_all_sequences

a character vector

Junction_frame_all_sequences

a character vector

Examples

data(clones.allind)
str(clones.allind)
boxplot(clones.allind$CDR3_length_AA ~ clones.allind$samples,xlab="sample",
     ylab="CDR3 length [AA]",xaxt="n",main="CDR3 length distribution of clones", las=3)
axis(1,at=seq(1,length(unique(clones.allind$samples)),1),
     unique(clones.allind$samples))

bcRep documentation built on May 2, 2019, 5:14 a.m.