plotClonesCopyNumber: Copy number of clones

In bcRep: Advanced Analysis of B Cell Receptor Repertoire Data

Description

This Function plots the copy number distribution of clones.

Usage

plotClonesCopyNumber(copyNumber = NULL, withOutliers = TRUE, color = "gray", 
     title = NULL, PDF=NULL, ...)

Arguments

copyNumber	Vector of copy numbers of clones
withOutliers	Shall outliers (anything bigger than 75
color	color used for plots (default: gray)
title	title of the plot (optional)
PDF	PDF project name (see Details)
...

Details

The PDF character string should be only the project name (without ".pdf").

A figure called "PDF"_Clone_copy_number.pdf will be saved to the working directory.

Author(s)

Julia Bischof

See Also

clones.CDR3Length, plotClonesCDR3Length

Examples

data(clones.ind)
## Not run: plotClonesCopyNumber(copyNumber = clones.ind$total_number_of_sequences, 
     color = "red", title = "Copy number distribution")
## End(Not run)

bcRep documentation built on May 2, 2019, 5:14 a.m.