biomod2-deprecated: Deprecated functions in package 'biomod2'.

In biomod2: Ensemble Platform for Species Distribution Modeling

Deprecated functions in package biomod2.

Description

The functions listed below are deprecated and were removed in the current version. When possible, alternative functions with similar functionality are mentioned. Help pages for deprecated functions are available at help("<function>-deprecated").

Usage

BIOMOD_ConvertOldRun(...)

BIOMOD_cv(...)

BIOMOD_CrossValidation(...)

BIOMOD_presenceonly(...)

BIOMOD_tuning(...)

BinaryTransformation(...)

calculate.stat(...)

CustomIndexMaker(...)

FilteringTransformation(...)

Find.Optim.Stat(...)

getStatOptimValue(...)

makeFormula(...)

models_scores_graph(...)

Print_Default_ModelingOptions(...)

ProbDensFunc(...)

response.plot(...)

response.plot2(...)

sample.factor.levels(...)

sre(...)

.transform.outputs.array(...)

.transform.outputs.list(...)

update_objects(...)

variables_importance(...)

BIOMOD_ConvertOldRun

BIOMOD_ConvertOldRun was removed in biomod2 version 4.0.

BIOMOD_cv

For BIOMOD_cv use BIOMOD_CrossValidation.

BIOMOD_CrossValidation

For BIOMOD_CrossValidation use bm_CrossValidation.

BIOMOD_presenceonly

For BIOMOD_presenceonly use BIOMOD_PresenceOnly.

BIOMOD_tuning

For BIOMOD_tuning use BIOMOD_Tuning.

BinaryTransformation

For BinaryTransformation use bm_BinaryTransformation.

calculate.stat

For calculate.stat use bm_CalculateStat.

CustomIndexMaker

CustomIndexMaker was removed in biomod2 version 4.0.

FilteringTransformation

For FilteringTransformation use BinaryTransformation.

Find.Optim.Stat

For Find.Optim.Stat use bm_FindOptimStat.

getStatOptimValue

For getStatOptimValue use get_optim_value.

makeFormula

For makeFormula use bm_MakeFormula.

models_scores_graph

For models_scores_graph use bm_PlotEvalMean.

Print_Default_ModelingOptions

For Print_Default_ModelingOptions use bm_DefaultModelingOptions.

ProbDensFunc

For ProbDensFunc use bm_PlotRangeSize.

response.plot

For response.plot use bm_PlotResponseCurves.

response.plot2

For response.plot2 use bm_PlotResponseCurves.

sample.factor.levels

For sample.factor.levels use bm_SampleFactorLevels.

sre

For sre use bm_SRE.

.transform.outputs.array

.transform.outputs.array was removed in biomod2 version 4.0.

.transform.outputs.list

For .transform.outputs.list use .transform_outputs_list.

update_objects

update_objects was removed in biomod2 version 4.0.

variables_importance

For variables_importance use bm_VariablesImportance.

biomod2 documentation built on July 9, 2023, 6:05 p.m.