conos: Clustering on Network of Samples

Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.

Getting started

Package details

AuthorViktor Petukhov [aut], Nikolas Barkas [aut], Peter Kharchenko [aut], Weiliang Qiu [ctb], Evan Biederstedt [aut, cre]
MaintainerEvan Biederstedt <evan.biederstedt@gmail.com>
LicenseGPL-3
Version1.4.0
URL https://github.com/kharchenkolab/conos
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("conos")

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conos documentation built on Feb. 23, 2021, 9:06 a.m.